PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G416800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 352aa    MW: 37858.1 Da    PI: 6.5958
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G416800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.3e-10155199549
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                         kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l
  Sevir.9G416800.1.p 155 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQL 199
                         9****************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-14151215IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.599153216IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-10155209No hitNo description
PfamPF001701.3E-8155201IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-11155206No hitNo description
CDDcd147035.66E-22156205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MQQHPEPADP PGRAFPPPPA PAPAAARGAY HRRARSEVAF RLPDDLGLGG GAGPDGDGFD  60
EIGSEDDLFS TFMDIEKISS SGPSDRDRDR AAETSSPPRP KHRHSSSVDG SGLFFSPGVG  120
GGAGKDAAAS LAEVMEAKKA MSPEQLAELA AIDPKRAKRI LANRQSAARS KERKARYITE  180
LERKVQTLQT EATTLSAQLT LFQRDTTGLS AENAELKIRL QAMEQQAQLR DALNDALKQE  240
LERLKLATGE TTNTSETYNM RFQHVPYNSS FFLLSQQNTA SHPGSAQLAP PFHPPHPNVP  300
NHQMLSHPHT LPDIMQQDSL GRLQGLDIGK GPLVVKSESS SISASESSST F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332100.0BT033210.1 Zea mays full-length cDNA clone ZM_BFb0176L19 mRNA, complete cds.
GenBankBT0632630.0BT063263.1 Zea mays full-length cDNA clone ZM_BFc0045A20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984459.10.0PREDICTED: transcription factor RF2b
SwissprotQ6S4P41e-165RF2B_ORYSJ; Transcription factor RF2b
TrEMBLK4ABX30.0K4ABX3_SETIT; Uncharacterized protein
STRINGSi036380m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.15e-71bZIP family protein